wsi-sampler.py run test result:

-changed hard coded input and outputs only
-run renamed version from the command line

ncsa-p10e4066-ofc:wsi-sampler yo$ python3 test_v0_sampler.py 
Printed 26 from /Users/yo/git_clone/ncsa_genomics/DigiPath_MLTK_data/Aperio/CMU-1-Small-Region.svs
ncsa-p10e4066-ofc:wsi-sampler yo$

images produced:

In [2]:
import os
from PIL import Image
In [3]:
output_dir = '/Users/yo/git_clone/ncsa_genomics/wsi_sampler_data/test_results/'
file_ext = '.jpg'
for f_name in os.listdir(output_dir):
    _, f_xt = os.path.splitext(f_name)
    if f_xt == file_ext:
        full_file_name = os.path.join(output_dir, f_name)
        if os.path.isfile(full_file_name):
            im = Image.open(full_file_name)
            print('\n', f_name, im.size)
            display(im)
 CMU-1_525_1036_0_512.jpg (512, 512)
 CMU-1_1551_1036_0_512.jpg (512, 512)
 CMU-1_2064_2060_0_512.jpg (512, 512)
 CMU-1_2577_1548_0_512.jpg (512, 512)
 CMU-1_1551_524_0_512.jpg (512, 512)
 CMU-1_2064_2572_0_512.jpg (512, 512)
 CMU-1_1038_1036_0_512.jpg (512, 512)
 CMU-1_2577_524_0_512.jpg (512, 512)
 CMU-1_1038_12_0_512.jpg (512, 512)
 CMU-1_2064_1548_0_512.jpg (512, 512)
 CMU-1_2577_2060_0_512.jpg (512, 512)
 CMU-1_525_1548_0_512.jpg (512, 512)
 CMU-1_1038_524_0_512.jpg (512, 512)
 CMU-1_2577_1036_0_512.jpg (512, 512)
 CMU-1_1038_1548_0_512.jpg (512, 512)
 CMU-1_1551_1548_0_512.jpg (512, 512)
 CMU-1_2064_524_0_512.jpg (512, 512)
 CMU-1_525_2572_0_512.jpg (512, 512)
 CMU-1_525_524_0_512.jpg (512, 512)
 CMU-1_525_2060_0_512.jpg (512, 512)
 CMU-1_1551_2572_0_512.jpg (512, 512)
 CMU-1_1038_2060_0_512.jpg (512, 512)
 CMU-1_1551_2060_0_512.jpg (512, 512)
 CMU-1_1038_2572_0_512.jpg (512, 512)
 CMU-1_2064_1036_0_512.jpg (512, 512)
 CMU-1_525_12_0_512.jpg (512, 512)
In [ ]: